Spatial Skin Atlas

Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma, Ganier et al. PNAS, 2024


Single-cell RNA sequencing

BCC and Normal (all)
Interactive viewer with cellxgene
BCC and Normal (epithelial)
Interactive viewer with cellxgene

Visium

Click on the images below to open an interactive view of visium data with cell2location predictions
When you are in the interactive view, click on the image icon on top right corner to toggle the H&E image of the Visium samples
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body_ inguinal2
WSSKNKCLsp10767968
Healthy Body Inguinal
Click to open in cellxgene Download .h5ad data
body_abdomen1b
WSSKNKCLsp10767965
Healthy Body Abdomen
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body_back1a
WSSKNKCLsp10446621
Healthy Body Back
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body_back1b
WSSKNKCLsp12887264
Healthy Body Back
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body_breast1
WSSKNKCLsp12887263
Healthy Body Breast
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body_inguinal1a
WSSKNKCLsp10446623
Healthy Body Inguinal
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body_inguinal1b
WSSKNKCLsp12887265
Healthy Body Inguinal
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body_pubis1
WSSKNKCLsp10767967
Healthy Body Pubis
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body_thigh1b
WSSKNKCLsp10767966
Healthy Body Thigh
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face_cheek1
WSSKNKCLsp10446620
Healthy Face Cheek
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face_cheek2
WSSKNKCLsp12140369
Healthy Face Cheek
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face_forehead1a
WSSKNKCLsp10446619
Healthy Face Forehead
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face_forehead1b
WSSKNKCLsp12140366
Healthy Face Forehead
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face_forehead2
WSSKNKCLsp12140367
Healthy Face Forehead
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face_glabella1
WSSKNKCLsp10446618
Healthy Face Glabella
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face_nose1a
WSSKNKCLsp10446617
Healthy Face Nose
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face_nose1b
WSSKNKCLsp12140368
Healthy Face Nose
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face_scalp1
WSSKNKCLsp12887266
Healthy Face Scalp
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face_temple1a
WSSKNKCLsp10446613
Healthy Face Temple
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face_temple1b
WSSKNKCLsp10446614
Healthy Face Temple
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face_temple2a
WSSKNKCLsp10446615
Healthy Face Temple
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face_temple2b
WSSKNKCLsp10446616
Healthy Face Temple
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bcc_face_cheek2
WSSKNKCLsp12140272
BCC Face Cheek
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bcc_face_nose1
WSSKNKCLsp12140273
BCC Face Nose
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bcc_face_nose2
WSSKNKCLsp12887267
BCC Face Nose
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bcc_face_cheek1
WSSKNKCLsp12140270
BCC Face Cheek
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bcc_face_ear1
WSSKNKCLsp12887268
BCC Face Ear
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bcc_face_forehead1
WSSKNKCLsp12140271
BCC Face Forehead
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bcc_face_forehead2
WSSKNKCLsp12887269
BCC Face Forehead
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bcc_face_nose3
WSSKNKCLsp12887270
BCC Face Nose
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In situ sequencing

face_glabella1
WSSKNKCLsp10446618
Healthy Face Glabella
Interactive viewer with Vitessce Download .tif image Download .csv molecules
face_cheek1
WSSKNKCLsp10446620
Healthy Face Cheek
Interactive viewer with Vitessce Download .tif image Download .csv molecules
body_thigh1b
WSSKNKCLsp10767966
Healthy Body Thigh
Interactive viewer with Vitessce Download .tif image Download .csv molecules
body_pubis1
WSSKNKCLsp10767967
Healthy Body Pubis
Interactive viewer with Vitessce Download .tif image Download .csv molecules
body_inguinal2
WSSKNKCLsp10767968
Healthy Body Inguinal
Interactive viewer with Vitessce Download .tif imgs as .zip Download .csv molecules
face_forehead2
WSSKNKCLsp12140367
Healthy Face Forehead
Interactive viewer with Vitessce Download .tif image Download .csv molecules
face_nose1b
WSSKNKCLsp12140368
Healthy Face Nose
Interactive viewer with Vitessce Download .tif image Download .csv molecules
body_breast1
WSSKNKCLsp12887263
Healthy Body Breast
Interactive viewer with Vitessce Download .tif image Download .csv molecules
bcc_face_cheek1
WSSKNKCLsp12140270
BCC Face Cheek
Interactive viewer with Vitessce Download .tif image Download .csv molecules
bcc_face_forehead1
WSSKNKCLsp12140271
BCC Face Forehead
Interactive viewer with Vitessce Download .tif image Download .csv molecules
bcc_face_cheek2
WSSKNKCLsp12140272
BCC Face Cheek
Interactive viewer with Vitessce Download .tif image Download .csv molecules
bcc_face_nose1
WSSKNKCLsp12140273
BCC Face Nose
Interactive viewer with Vitessce Download .tif image Download .csv molecules